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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">meat</journal-id><journal-title-group><journal-title xml:lang="en">Theory and practice of meat processing</journal-title><trans-title-group xml:lang="ru"><trans-title>Теория и практика переработки мяса</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2414-438X</issn><issn pub-type="epub">2414-441X</issn><publisher><publisher-name>ФГБНУ «Федеральный научный центр пищевых систем им. В.М. Горбатова» РАН</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.21323/2414-438X-2019-4-4-23-27</article-id><article-id custom-type="elpub" pub-id-type="custom">meat-126</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>Статьи</subject></subj-group></article-categories><title-group><article-title>Detection of soybean by real-time PCR in the samples subjected to deep technological processing</article-title><trans-title-group xml:lang="ru"><trans-title></trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Kurbakov</surname><given-names>K. A.</given-names></name></name-alternatives><bio xml:lang="en"><p>Konstantin A. Kurbakov — engineer of laboratory of hygiene of manufacture and microbiology, 109316, Moscow, Talalikhina str., 26. Tel: +7–495–676–60–11</p></bio><email xlink:type="simple">homo_ludens@vniimp.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Konorov</surname><given-names>E. A.</given-names></name></name-alternatives><bio xml:lang="en"><p>Evgenii A. Konorov — candidate of biological sciences, Senior researcher of Laboratory of molecular biology and bioinformatics, 109316, Moscow, Talalikhina str., 26. Tel: +7–495–676–60–11</p></bio><email xlink:type="simple">casqy@yandex.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Zhulinkova</surname><given-names>V. N.</given-names></name></name-alternatives><bio xml:lang="en"><p>Valentina N. Zhulinkova — engineer of laboratory of hygiene of manufacture and microbiology, 109316, Moscow, Talalikhina str., 26. Tel: +7(905)780–60–76</p></bio><email xlink:type="simple">v.julinkova@fncps.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Minaev</surname><given-names>M. Yu.</given-names></name></name-alternatives><bio xml:lang="en"><p>Mihail Yu. Minaev — candidate of technical sciences, head of Laboratory of molecular biology and bioinformatics, 109316, Moscow, Talalikhina str., 26. Tel.: +7–495–676–60–11</p></bio><email xlink:type="simple">mminaev@inbox.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff xml:lang="en" id="aff-1"><institution>V. M. Gorbatov Federal Research Center for Food Systems of Russian Academy of Sciences</institution><country>Russian Federation</country></aff><pub-date pub-type="collection"><year>2019</year></pub-date><pub-date pub-type="epub"><day>27</day><month>12</month><year>2019</year></pub-date><volume>4</volume><issue>4</issue><fpage>23</fpage><lpage>27</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Kurbakov K.A., Konorov E.A., Zhulinkova V.N., Minaev M.Y., 2019</copyright-statement><copyright-year>2019</copyright-year><copyright-holder xml:lang="ru">Kurbakov K.A., Konorov E.A., Zhulinkova V.N., Minaev M.Y.</copyright-holder><copyright-holder xml:lang="en">Kurbakov K.A., Konorov E.A., Zhulinkova V.N., Minaev M.Y.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.meatjournal.ru/jour/article/view/126">https://www.meatjournal.ru/jour/article/view/126</self-uri><abstract><p>During deep technological processing, DNA of food product components (specifically, in canned foods) is subjected to strong degradation, which makes the PCR-based food components identification more difficult. In this work, a primer-probe system is proposed, which was selected for the multi-copy region of long terminal repeat (LTR) of soybean (Glycine max). We confirmed its high sensitivity and specificity for soybean detection by real-time PCR. Using the selected system, we successfully analyzed the samples of meat-and-plant canned foods and other food products subjected to deep technological processing — tofu, preserved tofu, soy sauces, confectionary products containing soy lecithin. To compare with these samples, real-time PCR was carried out using the primer-probe system selected for the single-copy le1 gene. In terms of sensitivity, the use of the primer-probe system specific to the single-copy region was significantly inferior to the primer-probe system specific to the LTR region. The difference in the rate of degradation of these genomic DNA regions of Glycine max was found.</p></abstract><kwd-group xml:lang="en"><kwd>real-time PCR</kwd><kwd>Glycine max</kwd><kwd>species identification</kwd><kwd>food processing</kwd><kwd>DNA degradation</kwd></kwd-group><funding-group><funding-statement xml:lang="en">The work was performed within the framework of the theme of state task No. 0437–2019–0001 «Development of the system of complex assessment of the composition of food products made from raw materials of animal and plant origin».</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Scharf, A., Kasel, U., Wichmann, G., Besler, M. (2013). Performance of ELISA and PCR methods for the determination of allergens in food: an evaluation of six years of proficiency testing for soy (Glycine max L.) and wheat gluten (Triticum aestivum L.). Journal of agricultural and food chemistry, 61(43), 10261–10272. DOI: 10.1021/jf402619d</mixed-citation><mixed-citation xml:lang="en">Scharf, A., Kasel, U., Wichmann, G., Besler, M. (2013). Performance of ELISA and PCR methods for the determination of allergens in food: an evaluation of six years of proficiency testing for soy (Glycine max L.) and wheat gluten (Triticum aestivum L.). Journal of agricultural and food chemistry, 61(43), 10261–10272. DOI: 10.1021/jf402619d</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Köppel, R., Dvorak, V., Zimmerli, F., Breitenmoser, A., Eugster, A., Waiblinger, H. U. (2010). Two tetraplex real-time PCR for the detection and quantification of DNA from eight allergens in food. European Food Research and Technology, 230(3), 367–374. DOI: 10.1007/s00217–009–1164–3</mixed-citation><mixed-citation xml:lang="en">Köppel, R., Dvorak, V., Zimmerli, F., Breitenmoser, A., Eugster, A., Waiblinger, H. U. (2010). Two tetraplex real-time PCR for the detection and quantification of DNA from eight allergens in food. European Food Research and Technology, 230(3), 367–374. DOI: 10.1007/s00217–009–1164–3</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Costa, J., Amaral, J. S., Grazina, L., Oliveira, M. B. P. P, Mafra, I. (2017). Matrix-normalised real-time PCR approach to quantify soybean as a potential food allergen as affected by thermal processing. Food chemistry, 221, 1843–1850. DOI: 10.1016/j.foodchem.2016.10.091</mixed-citation><mixed-citation xml:lang="en">Costa, J., Amaral, J. S., Grazina, L., Oliveira, M. B. P. P, Mafra, I. (2017). Matrix-normalised real-time PCR approach to quantify soybean as a potential food allergen as affected by thermal processing. Food chemistry, 221, 1843–1850. DOI: 10.1016/j.foodchem.2016.10.091</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Murray, S. R., Butler, R. C., Timmerman-Vaughan, G. M. (2009). Quantitative real-time PCR assays to detect DNA degradation in soy-based food products. Journal of the Science of Food and Agriculture, 89(7), 1137–1144. DOI: 10.1002/jsfa.3563</mixed-citation><mixed-citation xml:lang="en">Murray, S. R., Butler, R. C., Timmerman-Vaughan, G. M. (2009). Quantitative real-time PCR assays to detect DNA degradation in soy-based food products. Journal of the Science of Food and Agriculture, 89(7), 1137–1144. DOI: 10.1002/jsfa.3563</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Ladenburger, E. M., Dehmer, M., Grünberg, R., Waiblinger, H. U., Stoll, D., Bergemann, J. (2018). Highly sensitive matrixindependent quantification of major food allergens peanut and soy by competitive real-time PCR targeting mitochondrial DNA. Journal of AOAC International, 101(1), 170–184. DOI: 10.5740/jaoacint.17–0406</mixed-citation><mixed-citation xml:lang="en">Ladenburger, E. M., Dehmer, M., Grünberg, R., Waiblinger, H. U., Stoll, D., Bergemann, J. (2018). Highly sensitive matrixindependent quantification of major food allergens peanut and soy by competitive real-time PCR targeting mitochondrial DNA. Journal of AOAC International, 101(1), 170–184. DOI: 10.5740/jaoacint.17–0406</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Mayer, W., Schuller, M., Viehauser, M. C., Hochegger, R. (2019). Quantification of the allergen soy (Glycine max) in food using digital droplet PCR (ddPCR). European Food Research and Technology, 245(2), 499–509. DOI: 10.1007/s00217–018–3182–5</mixed-citation><mixed-citation xml:lang="en">Mayer, W., Schuller, M., Viehauser, M. C., Hochegger, R. (2019). Quantification of the allergen soy (Glycine max) in food using digital droplet PCR (ddPCR). European Food Research and Technology, 245(2), 499–509. DOI: 10.1007/s00217–018–3182–5</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Pegels, N., González, I., López-Calleja, I., Fernández, S., García, T., Martín, R. (2012). Evaluation of a TaqMan real-time PCR assay for detection of chicken, turkey, duck, and goose material in highly processed industrial feed samples. Poultry Science, 91(7), 1709–1719. DOI: 10.3382/ps.2011–01954</mixed-citation><mixed-citation xml:lang="en">Pegels, N., González, I., López-Calleja, I., Fernández, S., García, T., Martín, R. (2012). Evaluation of a TaqMan real-time PCR assay for detection of chicken, turkey, duck, and goose material in highly processed industrial feed samples. Poultry Science, 91(7), 1709–1719. DOI: 10.3382/ps.2011–01954</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Ballin, N. Z., Vogensen, F. K., Karlsson, A. H. (2012). PCR amplification of repetitive sequences as a possible approach in relative species quantification. Meat science, 90(2), 438–443. DOI: 10.1016/j.meatsci.2011.09.002</mixed-citation><mixed-citation xml:lang="en">Ballin, N. Z., Vogensen, F. K., Karlsson, A. H. (2012). PCR amplification of repetitive sequences as a possible approach in relative species quantification. Meat science, 90(2), 438–443. DOI: 10.1016/j.meatsci.2011.09.002</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Yamakawa, H., Akiyama, H., Endo, Y., Miyatake, K., Sakata, K., Sakai, S., Moriyama, T., Urisu, A., Maitani, T (2007). Specific detection of soybean residues in processed foods by the polymerase chain reaction. Bioscience, biotechnology, and biochemistry, 71(1), 269–272. DOI: 10.1271/bbb.60485</mixed-citation><mixed-citation xml:lang="en">Yamakawa, H., Akiyama, H., Endo, Y., Miyatake, K., Sakata, K., Sakai, S., Moriyama, T., Urisu, A., Maitani, T (2007). Specific detection of soybean residues in processed foods by the polymerase chain reaction. Bioscience, biotechnology, and biochemistry, 71(1), 269–272. DOI: 10.1271/bbb.60485</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Mano, J., Nishitsuji, Y., Kikuchi, Y., Fukudome, S.-I., Hayashida, T., Kawakami, H., Kurimoto, Y., Noguchi, A., Kondo, K., Teshima, R. Takabatake, R., Kitta, K. (2017). Quantification of DNA frag mentation in processed foods using real-time PCR. Food chemistry, 226, 149–155. DOI: 10.1016/j.foodchem.2017.01.064</mixed-citation><mixed-citation xml:lang="en">Mano, J., Nishitsuji, Y., Kikuchi, Y., Fukudome, S.-I., Hayashida, T., Kawakami, H., Kurimoto, Y., Noguchi, A., Kondo, K., Teshima, R. Takabatake, R., Kitta, K. (2017). Quantification of DNA frag mentation in processed foods using real-time PCR. Food chemistry, 226, 149–155. DOI: 10.1016/j.foodchem.2017.01.064</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Bauer, T., Weller, P., Hammes, W. P., Hertel, C. (2003). The effect of processing parameters on DNA degradation in food. European Food Research and Technology, 217(4), 338–343 DOI: 10.1007/s00217–003–0743-y</mixed-citation><mixed-citation xml:lang="en">Bauer, T., Weller, P., Hammes, W. P., Hertel, C. (2003). The effect of processing parameters on DNA degradation in food. European Food Research and Technology, 217(4), 338–343 DOI: 10.1007/s00217–003–0743-y</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Caldwell, J.M., Pérez-Díaz, I.M., Sandeep, K.P., Simunovic, J., Harris, K., Osborne, J.A., Hassan, H.M. (2015). Mitochondrial DNA Fragmentation as a Molecular Tool to Monitor Thermal Processing of Plant-Derived, Low-Acid Foods, and Biomaterials. Journal of food science, 80(8), M1804-M1814. DOI: 10.1111/1750–3841.12937</mixed-citation><mixed-citation xml:lang="en">Caldwell, J.M., Pérez-Díaz, I.M., Sandeep, K.P., Simunovic, J., Harris, K., Osborne, J.A., Hassan, H.M. (2015). Mitochondrial DNA Fragmentation as a Molecular Tool to Monitor Thermal Processing of Plant-Derived, Low-Acid Foods, and Biomaterials. Journal of food science, 80(8), M1804-M1814. DOI: 10.1111/1750–3841.12937</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Wawrzynski, A., Ashfield, T., Chen, N.W.G., Young, N.D., Innes, R.W. (2008). Replication of nonautonomous retroelements in soybean appears to be both recent and common. Plant Physiology, 148(4), 1760–1771. DOI: 10.1104/pp.108.127910</mixed-citation><mixed-citation xml:lang="en">Wawrzynski, A., Ashfield, T., Chen, N.W.G., Young, N.D., Innes, R.W. (2008). Replication of nonautonomous retroelements in soybean appears to be both recent and common. Plant Physiology, 148(4), 1760–1771. DOI: 10.1104/pp.108.127910</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">GenBank®. Bethesda, MD, USA: National Center for Biotechnology Information (NCBI), US National Library of Medicine; 2017. Available from: http://www.ncbi.nlm.nih.gov/</mixed-citation><mixed-citation xml:lang="en">GenBank®. Bethesda, MD, USA: National Center for Biotechnology Information (NCBI), US National Library of Medicine; 2017. Available from: http://www.ncbi.nlm.nih.gov/</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Primer-BLAST. Bethesda, MD, USA: National Center for Biotechnology Information, U. S. National Library of Medicine; 2017. Available from: https://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi</mixed-citation><mixed-citation xml:lang="en">Primer-BLAST. Bethesda, MD, USA: National Center for Biotechnology Information, U. S. National Library of Medicine; 2017. Available from: https://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">OligoAnalyzer 3.1, Integrated DNA Technologies, Inc., Coralville, IA, USA; 2017. Available from: http://eu.idtdna.com/calc/analyzer.</mixed-citation><mixed-citation xml:lang="en">OligoAnalyzer 3.1, Integrated DNA Technologies, Inc., Coralville, IA, USA; 2017. Available from: http://eu.idtdna.com/calc/analyzer.</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Microsoft Excel 2016, Microsoft, Redmond, WA, USA; 2016.</mixed-citation><mixed-citation xml:lang="en">Microsoft Excel 2016, Microsoft, Redmond, WA, USA; 2016.</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Arun, Ö. Ö., Muratoğlu, K., Eker, F. Y. (2016). The effect of heat processing on pcr detection of genetically modified soy in bakery products. Journal of Food and Health, 2(3), 130–139. DOI: 10.3153/jfhs16014</mixed-citation><mixed-citation xml:lang="en">Arun, Ö. Ö., Muratoğlu, K., Eker, F. Y. (2016). The effect of heat processing on pcr detection of genetically modified soy in bakery products. Journal of Food and Health, 2(3), 130–139. DOI: 10.3153/jfhs16014</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Bauer, T., Hammes, W. P., Haase, N. U., Hertel, C. (2004). Effect of food components and processing parameters on DNA degradation in food. Environmental Biosafety Research, 3(4), 215–223. DOI: 10.1051/ebr:2005005</mixed-citation><mixed-citation xml:lang="en">Bauer, T., Hammes, W. P., Haase, N. U., Hertel, C. (2004). Effect of food components and processing parameters on DNA degradation in food. Environmental Biosafety Research, 3(4), 215–223. DOI: 10.1051/ebr:2005005</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Kostenko, A.A (2015). Methods of production of cheese tofu. Scientific works of Dalrybvtuz, 35, 143–148. (in Russian)</mixed-citation><mixed-citation xml:lang="en">Kostenko, A.A (2015). Methods of production of cheese tofu. Scientific works of Dalrybvtuz, 35, 143–148. (in Russian)</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Hefle, S. L., Lambrecht, D. M., Nordlee, J. A. (2005). Soy sauce retains allergenicity through the fermentation/production process. Journal of Allergy and Clinical Immunology, 115(2), S32. DOI: 10.1016/j.jaci.2004.12.143</mixed-citation><mixed-citation xml:lang="en">Hefle, S. L., Lambrecht, D. M., Nordlee, J. A. (2005). Soy sauce retains allergenicity through the fermentation/production process. Journal of Allergy and Clinical Immunology, 115(2), S32. DOI: 10.1016/j.jaci.2004.12.143</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
